Download jar files using Maven | Caching of Java libraries | Using local repository Jar files in rJava | Java compilation | Step 0: write some java code | Step 1: compile the jar | Step 2: use the jar | Options and configuration | What else could you do? | Further work

File output | Ggplot utilities | Tabular data in ggplots

Background | Maps and capacity data | Containment | Intersection | Areal interpolation | Geography as network | Preview a map with points of interest overlaid | Estimating the catchment areas of hospitals. | Displaying e.g. London as a popout | Facetted plot labelling

Tracking data provenance | Basic operation - comments and stratification | Status - Further analysis in the workflow | Filtering, exclusions and inclusions | Excluded data | Formatting options | Advanced handling of the history graph. | Combined data flows

Global configuration | Formatting options | Recording options | Naming conventions for groups | Default text | Subgroup count | Exclusions | Reporting exclusions which do nothing | Maximum groupings | Verbose output

Maximum groupings

CONSORT statement | Excluded data | Tagging the pipeline | Reusable functions | References

Datatype conversion | Round tripping data from R to Java to R | Nulls and voids | Character data | Numeric data | Integer data | Factors | Dates | Logicals | Files | Dataframes | Arrays | Lists | Generating data in Java | Primitive equivalents | Vectors | Dataframes and lists

Features | Installation and instantiation | Predictable data type conversion | More complex objects | Objects, fluent apis and factory methods | Logging, printing and exceptions | Finalising and clean up | Support for debugging | Asychronous and long running code | Parameters and return types in asynchronous methods | Monitoring the status of long running operations | Summary

Maven pom.xml options | Sample pom.xml | The r6-generator-runtime Java library | Github maven repository declarations for both code and plugins | Plugin configuration for the r6-generator-maven-plugin | outputDirectory | packageData | Goals

Imports | Wrapping and unwrapping | RVector creation and transformation | RDataframe binding to POJOs | Streaming POJOs to RDataframes | Lists and named lists

Installation instructions | Usage

Joins across data sets | Unions

Installation instructions | Initialising the library | Generating a PDF | Generating a pdf from HTML content | Multipage output

Roogledocs

Rationale | Basic usage | Write a java api: | Package it: | Run it from R: